Course: 602SM - GENOMICA APPLICATA 2024

Section outline

Select section General

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General

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- Select activity Annunci
  
  Annunci Forum
Select section Slides lezioni

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Slides lezioni
- Select activity Lecture 1 - Riepilogo concetti base di bioinformatica
  
  Lecture 1 - Riepilogo concetti base di bioinformatica File PPTX
- Select activity Lecture 2 - Past, present and future of functional genomics
  
  Lecture 2 - Past, present and future of functional genomics File PPTX
- Select activity Lecture 3 - DNA sequencing technologies
  
  Lecture 3 - DNA sequencing technologies File PPTX
- Select activity Lecture 4 - Preparation of samples and sequencing libraries
  
  Lecture 4 - Preparation of samples and sequencing libraries File PPTX
- Select activity Lecture 5 - Whole genome sequencing: assembly strategies and quality evaluation
  
  Lecture 5 - Whole genome sequencing: assembly strategies and quality evaluation File PPTX
- Select activity Lecture 6 - Whole genome resequencing and target resequencing approaches
  
  Lecture 6 - Whole genome resequencing and target resequencing approaches File PPTX
- Select activity Lecture 7 - RNA-sequencing
  
  Lecture 7 - RNA-sequencing File PPTX
- Select activity Lecture 8 - Biological interpretation of the results of «omic» experiments
  
  Lecture 8 - Biological interpretation of the results of «omic» experiments File PPTX
- Select activity Lecture 9 - small RNA analysis, single-cell RNA-seq and spatial transcriptomics
  
  Lecture 9 - small RNA analysis, single-cell RNA-seq and spatial transcriptomics File PPTX
- Select activity Lecture 10 - Metagenomics
  
  Lecture 10 - Metagenomics File PPTX
- Select activity Lecture 11 - Study of DNA/RNA – protein interactions and chromatin accessibility
  
  Lecture 11 - Study of DNA/RNA – protein interactions and chromatin accessibility File PPTX
- Select activity Lecture 12 - Epigenomics and epitranscriptomics
  
  Lecture 12 - Epigenomics and epitranscriptomics File PPTX
- Select activity Lecture 13 - Other advanced omic techniques
  
  Lecture 13 - Other advanced omic techniques File PPTX
Select section Articoli di approfondimento

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Articoli di approfondimento
- Select activity Articolo sul cromosoma 22 (1999)
  
  Articolo sul cromosoma 22 (1999) File PDF
- Select activity Articolo genoma umano - International Human Genome Sequencing Consortium (2001)
  
  Articolo genoma umano - International Human Genome Sequencing Consortium (2001) File PDF
- Select activity Articolo genoma umano - Venter et al. 2001
  
  Articolo genoma umano - Venter et al. 2001 File PDF
- Select activity Articolo genoma umano (2004)
  
  Articolo genoma umano (2004) File PDF
- Select activity Venter vs HGP
  
  Venter vs HGP File PDF
- Select activity Neanderthal genome - Svante Paabo
  
  Neanderthal genome - Svante Paabo File PDF
- Select activity Human Pangenome Consortium - prima pubblicazione
  
  Human Pangenome Consortium - prima pubblicazione File PDF
- Select activity Consorzio T2T - 2022
  
  Consorzio T2T - 2022 File PDF
- Select activity Sequenza del cromosoma Y
  
  Sequenza del cromosoma Y File PDF
- Select activity Adessi et al. - Polony sequencing
  
  Adessi et al. - Polony sequencing File PDF
- Select activity RNA-seq da campioni storici: il tilacino
  
  RNA-seq da campioni storici: il tilacino File PDF
- Select activity p-value e p-value corretti
  
  p-value e p-value corretti File PDF
- Select activity Esempio di analisi con IPA
  
  Esempio di analisi con IPA File PDF
- Select activity Esempio di analisi con iPathwayGiude
  
  Esempio di analisi con iPathwayGiude File PDF
- Select activity The Human Microbiome Project Consortium - paper 2012
  
  The Human Microbiome Project Consortium - paper 2012 File PDF
Select section Video

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Video
- Select activity Sequenziamento Illumina
  
  Sequenziamento Illumina Folder
- Select activity Sequenziamento IonTorrent
  
  Sequenziamento IonTorrent Folder
- Select activity Sequenziamento PacBio SMRT
  
  Sequenziamento PacBio SMRT Folder
- Select activity Sequenziamento Oxford nanopore
  
  Sequenziamento Oxford nanopore Folder
- Select activity Sequenziamento BGIseq
  
  Sequenziamento BGIseq Folder
- Select activity Avidity sequencing
  
  Avidity sequencing Folder
- Select activity Sequencing by extension
  
  Sequencing by extension Folder
- Select activity PacBio sequencing by binding
  
  PacBio sequencing by binding Folder
- Select activity Altre tecnologie di sequenziamento
  
  Altre tecnologie di sequenziamento Folder
- Select activity Piattaforme Bionano
  
  Piattaforme Bionano Folder
- Select activity Approcci single-cell sequencing
  
  Approcci single-cell sequencing Folder
- Select activity Preparazione librerie Hi-C
  
  Preparazione librerie Hi-C Folder
- Select activity Sequenziamento Ultima Genomics
  
  Sequenziamento Ultima Genomics Folder
- Select activity Spatial transcriptomics
  
  Spatial transcriptomics Folder
Select section Materiale per esercitazioni

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Materiale per esercitazioni
- Select activity Esercitazione su whole genome sequencing
  
  Esercitazione su whole genome sequencing File PPTX
- Select activity Esercitazione su dati RNA-seq
  
  Esercitazione su dati RNA-seq Folder
- Select activity Link - PCA
  
  Link - PCA URL
- Select activity Link - heat map
  
  Link - heat map URL
- Select activity Link - g:Profiler
  
  Link - g:Profiler URL
Select section Articoli esaminati a lezione

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Articoli esaminati a lezione
- Select activity Resolving the fibrotic niche of human liver cirrhosis at single-cell level
  
  Resolving the fibrotic niche of human liver cirrhosis at single-cell level File PDF
- Select activity Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology
  
  Clam focal and systemic immune responses to QPX infection revealed by RNA-seq technology File PDF
- Select activity Comprehensive Multi-omics Approaches Provide Insights to Summer Mortality in the Clam Meretrix petechialis
  
  Comprehensive Multi-omics Approaches Provide Insights to Summer Mortality in the Clam Meretrix petechialis File PDF
- Select activity Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin
  
  Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin File PDF
- Select activity A Preliminary Comparison on Faecal Microbiomes of Free-Ranging Large Baleen (Balaenoptera musculus, B. physalus, B. borealis) and Toothed (Physeter macrocephalus) Whales
  
  A Preliminary Comparison on Faecal Microbiomes of Free-Ranging Large Baleen (Balaenoptera musculus, B. physalus, B. borealis) and Toothed (Physeter macrocephalus) Whales File PDF
- Select activity Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
  
  Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores File PDF
- Select activity Genome-wide oxidative bisulﬁte sequencing identiﬁes sex-speciﬁc methylationdifferences in the human placenta
  
  Genome-wide oxidative bisulﬁte sequencing identiﬁes sex-speciﬁc methylationdifferences in the human placenta File PDF
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Topic 6
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Topic 7
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Topic 10